If using OEM conversion kit parts I don't see how that voids the warranty as it will provide better filtration but DIYer do haphazardly convert these to the HD filter system. The FR filter does clog easier and the filter covers before the latest version tend to break off. And FR design being used on ZTR is just asking for the filters
to be clogged easily too. So if EPA can prove that these makes the emissions worst by having a filter that filters better and stays cleaner longer then so be it. But in my opinion a filter that clogs easily will produce more emissions over the lifetime of the engine.
Here is a couple of the conversion using Kawasaki parts.
Due Kawasaki changes some of parts maybe different from these but give you the idea how the FR to FX filter change out looks.
I haven't done any as most of my customers are too cheap to have it done.