Well, I finally got the engine put back together. A couple of things to note: I read and followed all of the information in the Kohler Service Manual and on the service bulletin but for whatever reason I still ended up having a lot of RTV squeeze out of the side of the oil pan. I assume that a bunch squeezed into the engine as well. The RTV that I used was the Kohler part so it should have been a 1/16" bead but it appeared to be closer to 1/8th. Either way, the engine is running fine and I did not see any leaks after an hour of use. I figured I would just do another oil and filter change now in case any of the RTV has broken down and into the oil (and yes, I waited for the RTV to cure before putting oil back in). I think worst case the RTV gets caught in the oil pickup screen which I did clean thoroughly before putting it all back together so it should be able to take some slight clogging without causing any damage. Also, when replacing the main seal, I found that an old deck spindle with the bearings and shaft pulled out worked perfectly for setting the seal into the bottom of the oil pan. I think at this point I might educate myself on adjusting the valve lash and do that sometime soon since I have a little bit of RTV left.