From what I have read, the 'Boeing' system does not show the door ever being "removed" as it was only pivoted out of position and was still in contact with the fuselage. The 'Spirit" system would have shown the door as being "removed" with the same actions. So based on that, Boeing will not have records of a door being replaced that was never removed.It is Murphy at work.
Right now Boeing says can't even find the records for the plug door reinstall the blew out on the Alaskian airliner.