You can glue in another EXACT copy to replace the missing one
Or take out the one exactly opposite
The flywheel is balanced, by weight and for electrical generation
running without 1 magnet will get up vibrations in the flywheel which may do a lot of damage.
Vibration are funny things some times a really big one that makes the mower jump sideways will have no consequences
While other times, ones you can barely feel will destroy the entire engine. :confused2:
So you remove the opposite one to keep the flywheel in weight balance.
A lot of skid steers out there run with no magnets left in the flywheel at all and they just recharge the battery overnight