It ain't my way, it's Jacobsen's way, right out of their service manual. Kind of hard to argue with it, especially for me since I tried other ways with Jakes before finally finding the manual and using the way they recommended.
You protect the threads with the knock out nut over the end of the crankshaft. Since I couldn't locate a Jacobsen knock out nut, I used a coupling nut to spread the force over a greater area. You don't hit the threads, you hit the nut, and you don't have to hit it like you're going to drive it half way across the state, just a rap will do. Don't pry on it for the very reason you said a couple of posts ago, aluminum gets brittle and will stick to steel. You run the risk of breaking the flywheel.