I doubt this is the issue, but what are you torquing the rod bolts too?
in my manual it says,
"Torque connecting rod screws to 190 inch pounds, rotate crank 2 revolutions to check for binding, connecting rods should be free to move SIDEWAYS on the crank pin. (what the rods bolt too)
*Note: failure to use a torque wrench can result in loose connecting rod causing engine damage or tight connecting rods causing scoring.